3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
6CZR|1|1A|A|2459, 6CZR|1|1A|U|2460, 6CZR|1|1A|U|2620
QA status
Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6CZR|1|1A|A|2078
6CZR|1|1A|A|2079
6CZR|1|1A|A|2080
6CZR|1|1A|A|2081
6CZR|1|1A|G|2082
6CZR|1|1A|A|2083
6CZR|1|1A|C|2084
6CZR|1|1A|C|2085
*
6CZR|1|1A|G|2457
6CZR|1|1A|G|2458
6CZR|1|1A|A|2459
6CZR|1|1A|U|2460
6CZR|1|1A|A|2461
6CZR|1|1A|A|2462
6CZR|1|1A|C|2463
6CZR|1|1A|A|2464
*
6CZR|1|1A|U|2511
6CZR|1|1A|C|2512
6CZR|1|1A|G|2513
6CZR|1|1A|2MA|2514
6CZR|1|1A|U|2515
6CZR|1|1A|G|2516
6CZR|1|1A|U|2517
6CZR|1|1A|C|2518
*
6CZR|1|1A|G|2593
6CZR|1|1A|G|2594
6CZR|1|1A|U|2595
6CZR|1|1A|U|2596
6CZR|1|1A|C|2597
6CZR|1|1A|A|2598
6CZR|1|1A|G|2599
*
6CZR|1|1A|C|2617
6CZR|1|1A|G|2618
6CZR|1|1A|G|2619
6CZR|1|1A|U|2620
6CZR|1|1A|C|2621
6CZR|1|1A|U|2622

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1D
50S ribosomal protein L2
Chain 1E
50S ribosomal protein L3
Chain 1F
50S ribosomal protein L4
Chain 1P
50S ribosomal protein L15
Chain 1Q
50S ribosomal protein L16
Chain 1W
50S ribosomal protein L22

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4349 s
Application loaded.