3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6CZR|1|1a|A|103, 6CZR|1|1a|C|348
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6CZR|1|1a|C|59
6CZR|1|1a|A|60
6CZR|1|1a|A|61
6CZR|1|1a|G|62
*
6CZR|1|1a|C|100
6CZR|1|1a|G|101
6CZR|1|1a|G|102
6CZR|1|1a|A|103
6CZR|1|1a|C|104
6CZR|1|1a|G|105
6CZR|1|1a|G|106
6CZR|1|1a|G|107
*
6CZR|1|1a|C|310
6CZR|1|1a|A|311
6CZR|1|1a|G|312
*
6CZR|1|1a|C|333
6CZR|1|1a|A|334
6CZR|1|1a|C|335
*
6CZR|1|1a|G|346
6CZR|1|1a|G|347
6CZR|1|1a|C|348
6CZR|1|1a|A|349
6CZR|1|1a|G|350

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1O
50S ribosomal protein L14
Chain 1T
50S ribosomal protein L19
Chain 1p
30S ribosomal protein S16
Chain 1t
30S ribosomal protein S20

Coloring options:

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