3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AAG
Length
22 nucleotides
Bulged bases
6DDD|1|1|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6DDD_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.1002
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6DDD|1|1|C|47
6DDD|1|1|G|48
6DDD|1|1|A|49
6DDD|1|1|U|50
6DDD|1|1|G|51
6DDD|1|1|A|52
6DDD|1|1|A|53
6DDD|1|1|G|54
*
6DDD|1|1|C|115
6DDD|1|1|G|116
6DDD|1|1|A|117
6DDD|1|1|A|118
6DDD|1|1|U|119
6DDD|1|1|G|120
*
6DDD|1|1|C|129
6DDD|1|1|A|130
*
6DDD|1|1|U|149
6DDD|1|1|A|150
6DDD|1|1|U|151
*
6DDD|1|1|A|178
6DDD|1|1|A|179
6DDD|1|1|G|180

Current chains

Chain 1
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L23
Chain P
50S ribosomal protein L34

Coloring options:


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