J5_6DDD_001
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 6DDD|1|1|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DDD_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.1002
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6DDD|1|1|C|47
6DDD|1|1|G|48
6DDD|1|1|A|49
6DDD|1|1|U|50
6DDD|1|1|G|51
6DDD|1|1|A|52
6DDD|1|1|A|53
6DDD|1|1|G|54
*
6DDD|1|1|C|115
6DDD|1|1|G|116
6DDD|1|1|A|117
6DDD|1|1|A|118
6DDD|1|1|U|119
6DDD|1|1|G|120
*
6DDD|1|1|C|129
6DDD|1|1|A|130
*
6DDD|1|1|U|149
6DDD|1|1|A|150
6DDD|1|1|U|151
*
6DDD|1|1|A|178
6DDD|1|1|A|179
6DDD|1|1|G|180
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L23
- Chain P
- 50S ribosomal protein L34
Coloring options: