J5_6DDD_002
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 6DDD|1|1|U|301, 6DDD|1|1|U|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDD|1|1|C|271
6DDD|1|1|C|272
6DDD|1|1|A|273
6DDD|1|1|A|274
6DDD|1|1|A|275
6DDD|1|1|C|276
*
6DDD|1|1|G|295
6DDD|1|1|G|296
6DDD|1|1|G|297
6DDD|1|1|U|298
6DDD|1|1|U|299
6DDD|1|1|G|300
6DDD|1|1|U|301
6DDD|1|1|A|302
*
6DDD|1|1|U|415
6DDD|1|1|G|416
6DDD|1|1|A|417
6DDD|1|1|G|418
6DDD|1|1|U|419
6DDD|1|1|A|420
6DDD|1|1|C|421
*
6DDD|1|1|G|445
6DDD|1|1|G|446
6DDD|1|1|A|447
6DDD|1|1|A|448
6DDD|1|1|U|449
6DDD|1|1|C|450
6DDD|1|1|U|451
6DDD|1|1|G|452
*
6DDD|1|1|U|467
6DDD|1|1|A|468
6DDD|1|1|A|469
6DDD|1|1|G|470
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain J
- 50S ribosomal protein L28
Coloring options: