J5_6DDD_006
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6DDD|1|1|A|2089, 6DDD|1|1|A|2475, 6DDD|1|1|U|2476, 6DDD|1|1|U|2612, 6DDD|1|1|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDD|1|1|G|2084
6DDD|1|1|A|2085
6DDD|1|1|A|2086
6DDD|1|1|A|2087
6DDD|1|1|G|2088
6DDD|1|1|A|2089
6DDD|1|1|C|2090
6DDD|1|1|C|2091
*
6DDD|1|1|G|2473
6DDD|1|1|G|2474
6DDD|1|1|A|2475
6DDD|1|1|U|2476
6DDD|1|1|A|2477
6DDD|1|1|A|2478
6DDD|1|1|C|2479
6DDD|1|1|A|2480
*
6DDD|1|1|U|2527
6DDD|1|1|C|2528
6DDD|1|1|G|2529
6DDD|1|1|A|2530
6DDD|1|1|U|2531
6DDD|1|1|G|2532
6DDD|1|1|U|2533
*
6DDD|1|1|G|2610
6DDD|1|1|U|2611
6DDD|1|1|U|2612
6DDD|1|1|C|2613
6DDD|1|1|A|2614
6DDD|1|1|G|2615
*
6DDD|1|1|C|2633
6DDD|1|1|G|2634
6DDD|1|1|G|2635
6DDD|1|1|U|2636
6DDD|1|1|C|2637
6DDD|1|1|C|2638
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L22
- Chain L
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L32
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L16
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