J5_6DZI_004

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|C|694
6DZI|1|A|G|695
6DZI|1|A|A|696
6DZI|1|A|G|697
*
6DZI|1|A|C|718
6DZI|1|A|G|719
6DZI|1|A|C|720
6DZI|1|A|A|721
6DZI|1|A|G|722
*
6DZI|1|A|C|729
6DZI|1|A|G|730
6DZI|1|A|A|731
6DZI|1|A|G|732
*
6DZI|1|A|C|744
6DZI|1|A|G|745
6DZI|1|A|U|746
6DZI|1|A|A|747
6DZI|1|A|U|748
6DZI|1|A|C|749
*
6DZI|1|A|G|766
6DZI|1|A|U|767
6DZI|1|A|G|768
6DZI|1|A|U|769
6DZI|1|A|A|770
6DZI|1|A|G|771

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35