J5_6DZI_005

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGUUC*GGUGAGUCGGGAC*GACAA*UACC*GCCCGUAC

Length

35 nucleotides

Bulged bases

6DZI|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|G|1425
6DZI|1|A|G|1426
6DZI|1|A|U|1427
6DZI|1|A|U|1428
6DZI|1|A|C|1429
*
6DZI|1|A|G|1453
6DZI|1|A|G|1454
6DZI|1|A|U|1455
6DZI|1|A|G|1456
6DZI|1|A|A|1457
6DZI|1|A|G|1458
6DZI|1|A|U|1459
6DZI|1|A|C|1460
6DZI|1|A|G|1461
6DZI|1|A|G|1462
6DZI|1|A|G|1463
6DZI|1|A|A|1464
6DZI|1|A|C|1465
*
6DZI|1|A|G|1496
6DZI|1|A|A|1497
6DZI|1|A|C|1498
6DZI|1|A|A|1499
6DZI|1|A|A|1500
*
6DZI|1|A|U|1517
6DZI|1|A|A|1518
6DZI|1|A|C|1519
6DZI|1|A|C|1520
*
6DZI|1|A|G|1815
6DZI|1|A|C|1816
6DZI|1|A|C|1817
6DZI|1|A|C|1818
6DZI|1|A|G|1819
6DZI|1|A|U|1820
6DZI|1|A|A|1821
6DZI|1|A|C|1822

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34