J5_6DZI_007

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU

Length

37 nucleotides

Bulged bases

6DZI|1|A|A|2286, 6DZI|1|A|A|2672, 6DZI|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|A|2281
6DZI|1|A|A|2282
6DZI|1|A|A|2283
6DZI|1|A|A|2284
6DZI|1|A|G|2285
6DZI|1|A|A|2286
6DZI|1|A|C|2287
6DZI|1|A|C|2288
*
6DZI|1|A|G|2670
6DZI|1|A|G|2671
6DZI|1|A|A|2672
6DZI|1|A|U|2673
6DZI|1|A|A|2674
6DZI|1|A|A|2675
6DZI|1|A|C|2676
6DZI|1|A|A|2677
*
6DZI|1|A|U|2724
6DZI|1|A|C|2725
6DZI|1|A|G|2726
6DZI|1|A|A|2727
6DZI|1|A|U|2728
6DZI|1|A|G|2729
6DZI|1|A|U|2730
6DZI|1|A|C|2731
*
6DZI|1|A|G|2806
6DZI|1|A|G|2807
6DZI|1|A|U|2808
6DZI|1|A|U|2809
6DZI|1|A|U|2810
6DZI|1|A|A|2811
6DZI|1|A|G|2812
*
6DZI|1|A|C|2830
6DZI|1|A|G|2831
6DZI|1|A|G|2832
6DZI|1|A|U|2833
6DZI|1|A|C|2834
6DZI|1|A|U|2835

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32