J5_6DZI_009

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CGAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6DZI_009 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1705

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6DZI|1|h|C|40
6DZI|1|h|U|41
6DZI|1|h|G|42
6DZI|1|h|G|43
*
6DZI|1|h|C|403
6DZI|1|h|G|404
6DZI|1|h|U|405
6DZI|1|h|G|406
*
6DZI|1|h|C|436
6DZI|1|h|U|437
6DZI|1|h|U|438
6DZI|1|h|U|439
6DZI|1|h|C|440
*
6DZI|1|h|G|477
6DZI|1|h|A|478
6DZI|1|h|A|479
6DZI|1|h|G|480
*
6DZI|1|h|C|525
6DZI|1|h|G|526
6DZI|1|h|A|527
6DZI|1|h|G|528

Current chains

Chain h

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain u

30S ribosomal protein S12