J5_6DZK_002
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DZK_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1223
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6DZK|1|A|C|40
6DZK|1|A|U|41
6DZK|1|A|G|42
6DZK|1|A|G|43
*
6DZK|1|A|C|403
6DZK|1|A|G|404
6DZK|1|A|U|405
6DZK|1|A|G|406
*
6DZK|1|A|C|436
6DZK|1|A|U|437
6DZK|1|A|U|438
6DZK|1|A|U|439
6DZK|1|A|C|440
6DZK|1|A|A|441
6DZK|1|A|G|442
*
6DZK|1|A|C|472
6DZK|1|A|A|473
6DZK|1|A|G|474
6DZK|1|A|A|475
6DZK|1|A|A|476
6DZK|1|A|G|477
6DZK|1|A|A|478
6DZK|1|A|A|479
6DZK|1|A|G|480
*
6DZK|1|A|C|525
6DZK|1|A|G|526
6DZK|1|A|A|527
6DZK|1|A|G|528
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: