J5_6DZP_001

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6DZP|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6DZP_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1428

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6DZP|1|A|C|44
6DZP|1|A|G|45
6DZP|1|A|A|46
6DZP|1|A|U|47
6DZP|1|A|G|48
6DZP|1|A|A|49
6DZP|1|A|A|50
6DZP|1|A|G|51
*
6DZP|1|A|C|113
6DZP|1|A|G|114
6DZP|1|A|A|115
6DZP|1|A|A|116
6DZP|1|A|U|117
6DZP|1|A|G|118
*
6DZP|1|A|C|127
6DZP|1|A|G|128
*
6DZP|1|A|C|147
6DZP|1|A|A|148
6DZP|1|A|C|149
*
6DZP|1|A|G|175
6DZP|1|A|G|176
6DZP|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34