J5_6DZP_004

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|C|694
6DZP|1|A|G|695
6DZP|1|A|A|696
6DZP|1|A|G|697
*
6DZP|1|A|C|718
6DZP|1|A|G|719
6DZP|1|A|C|720
6DZP|1|A|A|721
6DZP|1|A|G|722
*
6DZP|1|A|C|729
6DZP|1|A|G|730
6DZP|1|A|A|731
6DZP|1|A|G|732
*
6DZP|1|A|C|744
6DZP|1|A|G|745
6DZP|1|A|U|746
6DZP|1|A|A|747
6DZP|1|A|U|748
6DZP|1|A|C|749
*
6DZP|1|A|G|766
6DZP|1|A|U|767
6DZP|1|A|G|768
6DZP|1|A|U|769
6DZP|1|A|A|770
6DZP|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35