J5_6DZP_007

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU

Length

37 nucleotides

Bulged bases

6DZP|1|A|A|2286, 6DZP|1|A|A|2672, 6DZP|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|A|2281
6DZP|1|A|A|2282
6DZP|1|A|A|2283
6DZP|1|A|A|2284
6DZP|1|A|G|2285
6DZP|1|A|A|2286
6DZP|1|A|C|2287
6DZP|1|A|C|2288
*
6DZP|1|A|G|2670
6DZP|1|A|G|2671
6DZP|1|A|A|2672
6DZP|1|A|U|2673
6DZP|1|A|A|2674
6DZP|1|A|A|2675
6DZP|1|A|C|2676
6DZP|1|A|A|2677
*
6DZP|1|A|U|2724
6DZP|1|A|C|2725
6DZP|1|A|G|2726
6DZP|1|A|A|2727
6DZP|1|A|U|2728
6DZP|1|A|G|2729
6DZP|1|A|U|2730
6DZP|1|A|C|2731
*
6DZP|1|A|G|2806
6DZP|1|A|G|2807
6DZP|1|A|U|2808
6DZP|1|A|U|2809
6DZP|1|A|U|2810
6DZP|1|A|A|2811
6DZP|1|A|G|2812
*
6DZP|1|A|C|2830
6DZP|1|A|G|2831
6DZP|1|A|G|2832
6DZP|1|A|U|2833
6DZP|1|A|C|2834
6DZP|1|A|U|2835

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32