J5_6EM1_001
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6EM1|1|2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6EM1_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1163
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6EM1|1|1|A|20
6EM1|1|1|G|21
6EM1|1|1|G|22
*
6EM1|1|2|C|35
6EM1|1|2|G|36
6EM1|1|2|A|37
6EM1|1|2|U|38
6EM1|1|2|G|39
6EM1|1|2|A|40
6EM1|1|2|A|41
6EM1|1|2|G|42
*
6EM1|1|2|U|102
6EM1|1|2|G|103
6EM1|1|2|A|104
6EM1|1|2|A|105
6EM1|1|2|C|106
6EM1|1|2|G|107
*
6EM1|1|2|C|115
6EM1|1|2|G|116
*
6EM1|1|2|C|137
6EM1|1|2|A|138
6EM1|1|2|U|139
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
Coloring options: