3D structure

PDB id
6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
6EM1|1|2|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6EM1_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.1163
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6EM1|1|1|A|20
6EM1|1|1|G|21
6EM1|1|1|G|22
*
6EM1|1|2|C|35
6EM1|1|2|G|36
6EM1|1|2|A|37
6EM1|1|2|U|38
6EM1|1|2|G|39
6EM1|1|2|A|40
6EM1|1|2|A|41
6EM1|1|2|G|42
*
6EM1|1|2|U|102
6EM1|1|2|G|103
6EM1|1|2|A|104
6EM1|1|2|A|105
6EM1|1|2|C|106
6EM1|1|2|G|107
*
6EM1|1|2|C|115
6EM1|1|2|G|116
*
6EM1|1|2|C|137
6EM1|1|2|A|138
6EM1|1|2|U|139

Current chains

Chain 1
25S ribosomal RNA
Chain 2
5.8S ribosomal RNA

Nearby chains

Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A
Chain j
60S ribosomal protein L37-A
Chain v
Nucleolar protein 16

Coloring options:


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