J5_6EM1_002
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCAAAUUUGAAA*UAAUUUGGAG*CGAAGAGUCG*CUAAGUG*UAAA
- Length
- 43 nucleotides
- Bulged bases
- 6EM1|1|1|U|117, 6EM1|1|1|G|120, 6EM1|1|1|A|121, 6EM1|1|1|G|156, 6EM1|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|U|112
6EM1|1|1|C|113
6EM1|1|1|A|114
6EM1|1|1|A|115
6EM1|1|1|A|116
6EM1|1|1|U|117
6EM1|1|1|U|118
6EM1|1|1|U|119
6EM1|1|1|G|120
6EM1|1|1|A|121
6EM1|1|1|A|122
6EM1|1|1|A|123
*
6EM1|1|1|U|149
6EM1|1|1|A|150
6EM1|1|1|A|151
6EM1|1|1|U|152
6EM1|1|1|U|153
6EM1|1|1|U|154
6EM1|1|1|G|155
6EM1|1|1|G|156
6EM1|1|1|A|157
6EM1|1|1|G|158
*
6EM1|1|1|C|263
6EM1|1|1|G|264
6EM1|1|1|A|265
6EM1|1|1|A|266
6EM1|1|1|G|267
6EM1|1|1|A|268
6EM1|1|1|G|269
6EM1|1|1|U|270
6EM1|1|1|C|271
6EM1|1|1|G|272
*
6EM1|1|1|C|293
6EM1|1|1|U|294
6EM1|1|1|A|295
6EM1|1|1|A|296
6EM1|1|1|G|297
6EM1|1|1|U|298
6EM1|1|1|G|299
*
6EM1|1|1|U|316
6EM1|1|1|A|317
6EM1|1|1|A|318
6EM1|1|1|A|319
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-B
- Chain m
- Ribosome biogenesis protein ERB1
- Chain v
- Nucleolar protein 16
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