J5_6ENJ_001

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ENJ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ENJ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1053

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ENJ|1|A|C|47
6ENJ|1|A|G|48
6ENJ|1|A|A|49
6ENJ|1|A|U|50
6ENJ|1|A|G|51
6ENJ|1|A|A|52
6ENJ|1|A|A|53
6ENJ|1|A|G|54
*
6ENJ|1|A|C|116
6ENJ|1|A|G|117
6ENJ|1|A|A|118
6ENJ|1|A|A|119
6ENJ|1|A|U|120
6ENJ|1|A|G|121
*
6ENJ|1|A|C|130
6ENJ|1|A|A|131
*
6ENJ|1|A|U|148
6ENJ|1|A|A|149
6ENJ|1|A|U|150
*
6ENJ|1|A|A|176
6ENJ|1|A|G|177
6ENJ|1|A|G|178

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34