J5_6FAI_002

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6FAI|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|C|31
6FAI|1|2|U|32
6FAI|1|2|U|33
6FAI|1|2|G|34
6FAI|1|2|U|35
*
6FAI|1|2|A|473
6FAI|1|2|A|474
6FAI|1|2|A|475
6FAI|1|2|U|476
6FAI|1|2|A|477
6FAI|1|2|A|478
6FAI|1|2|C|479
*
6FAI|1|2|G|509
6FAI|1|2|G|510
6FAI|1|2|A|511
6FAI|1|2|A|512
6FAI|1|2|U|513
6FAI|1|2|G|514
6FAI|1|2|A|515
6FAI|1|2|G|516
*
6FAI|1|2|C|536
6FAI|1|2|G|537
6FAI|1|2|A|538
6FAI|1|2|G|539
6FAI|1|2|G|540
6FAI|1|2|A|541
6FAI|1|2|A|542
6FAI|1|2|C|543
6FAI|1|2|A|544
6FAI|1|2|A|545
6FAI|1|2|U|546
*
6FAI|1|2|A|592
6FAI|1|2|U|593
6FAI|1|2|A|594
6FAI|1|2|G|595

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain k

Ribosome biogenesis protein TSR1