J5_6FAI_005

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6FAI|1|2|U|128, 6FAI|1|2|A|140, 6FAI|1|2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|A|124
6FAI|1|2|U|125
6FAI|1|2|A|126
6FAI|1|2|G|127
6FAI|1|2|U|128
6FAI|1|2|U|129
6FAI|1|2|C|130
6FAI|1|2|C|131
6FAI|1|2|U|132
6FAI|1|2|U|133
6FAI|1|2|U|134
6FAI|1|2|A|135
6FAI|1|2|C|136
6FAI|1|2|U|137
6FAI|1|2|A|138
6FAI|1|2|C|139
6FAI|1|2|A|140
6FAI|1|2|U|141
6FAI|1|2|G|142
6FAI|1|2|G|143
*
6FAI|1|2|C|172
6FAI|1|2|A|173
6FAI|1|2|U|174
6FAI|1|2|G|175
6FAI|1|2|C|176
6FAI|1|2|U|177
6FAI|1|2|U|178
6FAI|1|2|A|179
6FAI|1|2|A|180
6FAI|1|2|A|181
6FAI|1|2|A|182
*
6FAI|1|2|U|203
6FAI|1|2|G|204
*
6FAI|1|2|C|263
6FAI|1|2|G|264
6FAI|1|2|A|265
6FAI|1|2|A|266
6FAI|1|2|U|267
*
6FAI|1|2|A|288
6FAI|1|2|U|289
6FAI|1|2|G|290
6FAI|1|2|G|291
6FAI|1|2|U|292
6FAI|1|2|U|293

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A