J5_6FAI_007

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6FAI|1|2|U|694, 6FAI|1|2|C|696, 6FAI|1|2|U|742, 6FAI|1|2|U|813, 6FAI|1|2|G|815, 6FAI|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|A|636
6FAI|1|2|C|637
6FAI|1|2|U|638
6FAI|1|2|U|639
6FAI|1|2|U|640
6FAI|1|2|G|641
*
6FAI|1|2|U|693
6FAI|1|2|U|694
6FAI|1|2|U|695
6FAI|1|2|C|696
6FAI|1|2|C|697
6FAI|1|2|U|698
*
6FAI|1|2|A|740
6FAI|1|2|C|741
6FAI|1|2|U|742
6FAI|1|2|U|743
6FAI|1|2|U|744
*
6FAI|1|2|A|807
6FAI|1|2|U|808
6FAI|1|2|A|809
6FAI|1|2|G|810
6FAI|1|2|A|811
6FAI|1|2|A|812
6FAI|1|2|U|813
6FAI|1|2|A|814
6FAI|1|2|G|815
6FAI|1|2|G|816
6FAI|1|2|A|817
*
6FAI|1|2|U|854
6FAI|1|2|A|855
6FAI|1|2|A|856
6FAI|1|2|U|857
6FAI|1|2|G|858
6FAI|1|2|A|859
6FAI|1|2|U|860

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A