J5_6FT6_005
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAGAAGAC*GAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
- Length
- 61 nucleotides
- Bulged bases
- 6FT6|1|1|U|2818, 6FT6|1|1|G|2824, 6FT6|1|1|G|2828, 6FT6|1|1|U|2829, 6FT6|1|1|U|2859, 6FT6|1|1|U|2860, 6FT6|1|1|U|2861, 6FT6|1|1|U|2862, 6FT6|1|1|G|2863, 6FT6|1|1|C|2867, 6FT6|1|1|U|2868, 6FT6|1|1|U|2869, 6FT6|1|1|C|2870, 6FT6|1|1|G|2871, 6FT6|1|1|A|2872, 6FT6|1|1|U|2978, 6FT6|1|1|U|2979, 6FT6|1|1|U|2980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FT6|1|1|A|2398
6FT6|1|1|A|2399
6FT6|1|1|G|2400
6FT6|1|1|A|2401
6FT6|1|1|A|2402
6FT6|1|1|G|2403
6FT6|1|1|A|2404
6FT6|1|1|C|2405
*
6FT6|1|1|G|2816
6FT6|1|1|A|2817
6FT6|1|1|U|2818
6FT6|1|1|A|2819
6FT6|1|1|A|2820
6FT6|1|1|C|2821
6FT6|1|1|U|2822
6FT6|1|1|G|2823
6FT6|1|1|G|2824
6FT6|1|1|C|2825
6FT6|1|1|U|2826
6FT6|1|1|U|2827
6FT6|1|1|G|2828
6FT6|1|1|U|2829
6FT6|1|1|G|2830
6FT6|1|1|G|2831
6FT6|1|1|C|2832
*
6FT6|1|1|G|2856
6FT6|1|1|C|2857
6FT6|1|1|U|2858
6FT6|1|1|U|2859
6FT6|1|1|U|2860
6FT6|1|1|U|2861
6FT6|1|1|U|2862
6FT6|1|1|G|2863
6FT6|1|1|A|2864
6FT6|1|1|U|2865
6FT6|1|1|U|2866
6FT6|1|1|C|2867
6FT6|1|1|U|2868
6FT6|1|1|U|2869
6FT6|1|1|C|2870
6FT6|1|1|G|2871
6FT6|1|1|A|2872
6FT6|1|1|U|2873
6FT6|1|1|G|2874
6FT6|1|1|U|2875
6FT6|1|1|C|2876
*
6FT6|1|1|G|2950
6FT6|1|1|G|2951
6FT6|1|1|G|2952
6FT6|1|1|U|2953
6FT6|1|1|U|2954
6FT6|1|1|U|2955
6FT6|1|1|A|2956
6FT6|1|1|G|2957
*
6FT6|1|1|U|2975
6FT6|1|1|A|2976
6FT6|1|1|G|2977
6FT6|1|1|U|2978
6FT6|1|1|U|2979
6FT6|1|1|U|2980
6FT6|1|1|U|2981
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain x
- Ribosome assembly protein 4
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