J5_6FTI_004
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6FTI|1|u|A|3908, 6FTI|1|u|A|4394, 6FTI|1|u|U|4555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTI|1|u|A|3903
6FTI|1|u|G|3904
6FTI|1|u|A|3905
6FTI|1|u|A|3906
6FTI|1|u|G|3907
6FTI|1|u|A|3908
6FTI|1|u|C|3909
6FTI|1|u|C|3910
*
6FTI|1|u|G|4392
6FTI|1|u|G|4393
6FTI|1|u|A|4394
6FTI|1|u|U|4395
6FTI|1|u|A|4396
6FTI|1|u|A|4397
6FTI|1|u|C|4398
6FTI|1|u|U|4399
6FTI|1|u|G|4400
*
6FTI|1|u|C|4444
6FTI|1|u|U|4445
6FTI|1|u|U|4446
6FTI|1|u|C|4447
6FTI|1|u|G|4448
6FTI|1|u|A|4449
6FTI|1|u|U|4450
6FTI|1|u|G|4451
6FTI|1|u|U|4452
6FTI|1|u|C|4453
*
6FTI|1|u|G|4528
6FTI|1|u|G|4529
6FTI|1|u|U|4530
6FTI|1|u|U|4531
6FTI|1|u|U|4532
6FTI|1|u|A|4533
6FTI|1|u|G|4534
*
6FTI|1|u|U|4552
6FTI|1|u|A|4553
6FTI|1|u|G|4554
6FTI|1|u|U|4555
6FTI|1|u|U|4556
6FTI|1|u|U|4557
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- Ribosomal protein L4
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
- Chain q
- Transfer RNA; tRNA
Coloring options: