J5_6FTJ_002
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6FTJ|1|u|C|2289, 6FTJ|1|u|U|2350
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FTJ_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1626
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6FTJ|1|u|G|1335
6FTJ|1|u|G|1336
6FTJ|1|u|A|1337
6FTJ|1|u|G|1338
6FTJ|1|u|U|1339
6FTJ|1|u|C|1340
*
6FTJ|1|u|G|1516
6FTJ|1|u|G|1517
6FTJ|1|u|A|1518
6FTJ|1|u|C|1519
*
6FTJ|1|u|G|1658
6FTJ|1|u|U|1659
6FTJ|1|u|U|1660
6FTJ|1|u|C|1661
*
6FTJ|1|u|G|2288
6FTJ|1|u|C|2289
6FTJ|1|u|C|2290
*
6FTJ|1|u|G|2345
6FTJ|1|u|C|2346
6FTJ|1|u|A|2347
6FTJ|1|u|G|2348
6FTJ|1|u|A|2349
6FTJ|1|u|U|2350
6FTJ|1|u|C|2351
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: