J5_6FTJ_003
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6FTJ|1|u|G|3620, 6FTJ|1|u|G|3625
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FTJ_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1132
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTJ|1|u|G|2855
6FTJ|1|u|C|2856
6FTJ|1|u|A|2857
6FTJ|1|u|A|2858
6FTJ|1|u|G|2859
6FTJ|1|u|C|2860
6FTJ|1|u|C|2861
6FTJ|1|u|G|2862
6FTJ|1|u|G|2863
*
6FTJ|1|u|U|2887
6FTJ|1|u|G|2888
*
6FTJ|1|u|U|3613
6FTJ|1|u|G|3614
*
6FTJ|1|u|C|3618
6FTJ|1|u|G|3619
6FTJ|1|u|G|3620
6FTJ|1|u|A|3621
6FTJ|1|u|C|3622
6FTJ|1|u|C|3623
6FTJ|1|u|A|3624
6FTJ|1|u|G|3625
6FTJ|1|u|G|3626
*
6FTJ|1|u|C|3835
6FTJ|1|u|A|3836
6FTJ|1|u|C|3837
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain R
- eL19
- Chain V
- uL14
- Chain W
- Ribosomal protein L24
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