J5_6FTJ_004
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6FTJ|1|u|A|3908, 6FTJ|1|u|A|4394, 6FTJ|1|u|U|4555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTJ|1|u|A|3903
6FTJ|1|u|G|3904
6FTJ|1|u|A|3905
6FTJ|1|u|A|3906
6FTJ|1|u|G|3907
6FTJ|1|u|A|3908
6FTJ|1|u|C|3909
6FTJ|1|u|C|3910
*
6FTJ|1|u|G|4392
6FTJ|1|u|G|4393
6FTJ|1|u|A|4394
6FTJ|1|u|U|4395
6FTJ|1|u|A|4396
6FTJ|1|u|A|4397
6FTJ|1|u|C|4398
6FTJ|1|u|U|4399
6FTJ|1|u|G|4400
*
6FTJ|1|u|C|4444
6FTJ|1|u|U|4445
6FTJ|1|u|U|4446
6FTJ|1|u|C|4447
6FTJ|1|u|G|4448
6FTJ|1|u|A|4449
6FTJ|1|u|U|4450
6FTJ|1|u|G|4451
6FTJ|1|u|U|4452
6FTJ|1|u|C|4453
*
6FTJ|1|u|G|4528
6FTJ|1|u|G|4529
6FTJ|1|u|U|4530
6FTJ|1|u|U|4531
6FTJ|1|u|U|4532
6FTJ|1|u|A|4533
6FTJ|1|u|G|4534
*
6FTJ|1|u|U|4552
6FTJ|1|u|A|4553
6FTJ|1|u|G|4554
6FTJ|1|u|U|4555
6FTJ|1|u|U|4556
6FTJ|1|u|U|4557
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- Ribosomal protein L4
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
Coloring options: