J5_6FYX_006

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUGGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

6FYX|1|2|U|638, 6FYX|1|2|U|694, 6FYX|1|2|C|696, 6FYX|1|2|C|697, 6FYX|1|2|U|812, 6FYX|1|2|G|814, 6FYX|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYX|1|2|A|635
6FYX|1|2|C|636
6FYX|1|2|U|637
6FYX|1|2|U|638
6FYX|1|2|U|639
6FYX|1|2|G|640
*
6FYX|1|2|U|693
6FYX|1|2|U|694
6FYX|1|2|U|695
6FYX|1|2|C|696
6FYX|1|2|C|697
6FYX|1|2|U|698
6FYX|1|2|U|699
6FYX|1|2|C|700
*
6FYX|1|2|G|738
6FYX|1|2|G|739
6FYX|1|2|A|740
6FYX|1|2|C|741
6FYX|1|2|U|742
6FYX|1|2|U|743
6FYX|1|2|U|744
*
6FYX|1|2|A|806
6FYX|1|2|U|807
6FYX|1|2|G|808
6FYX|1|2|G|809
6FYX|1|2|A|810
6FYX|1|2|A|811
6FYX|1|2|U|812
6FYX|1|2|A|813
6FYX|1|2|G|814
6FYX|1|2|G|815
6FYX|1|2|A|816
*
6FYX|1|2|U|853
6FYX|1|2|A|854
6FYX|1|2|A|855
6FYX|1|2|U|856
6FYX|1|2|G|857
6FYX|1|2|A|858
6FYX|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

40S ribosomal protein S22

Chain X

KLLA0B11231p