J5_6FYY_002

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAC*GUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|C|31
6FYY|1|2|U|32
6FYY|1|2|U|33
6FYY|1|2|G|34
6FYY|1|2|U|35
*
6FYY|1|2|A|472
6FYY|1|2|A|473
6FYY|1|2|A|474
6FYY|1|2|U|475
6FYY|1|2|A|476
6FYY|1|2|A|477
6FYY|1|2|C|478
*
6FYY|1|2|G|508
6FYY|1|2|G|509
6FYY|1|2|A|510
6FYY|1|2|A|511
6FYY|1|2|U|512
6FYY|1|2|G|513
6FYY|1|2|A|514
6FYY|1|2|G|515
*
6FYY|1|2|C|535
6FYY|1|2|G|536
6FYY|1|2|A|537
6FYY|1|2|G|538
6FYY|1|2|G|539
6FYY|1|2|A|540
6FYY|1|2|A|541
6FYY|1|2|C|542
6FYY|1|2|A|543
6FYY|1|2|A|544
6FYY|1|2|C|545
*
6FYY|1|2|G|591
6FYY|1|2|U|592
6FYY|1|2|A|593
6FYY|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain Y

40S ribosomal protein S24

Chain e

40S ribosomal protein S30

Chain p

Eukaryotic translation initiation factor 3 subunit B