J5_6FYY_006

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUGGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

6FYY|1|2|U|638, 6FYY|1|2|U|694, 6FYY|1|2|C|696, 6FYY|1|2|C|697, 6FYY|1|2|U|812, 6FYY|1|2|G|814, 6FYY|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FYY|1|2|A|635
6FYY|1|2|C|636
6FYY|1|2|U|637
6FYY|1|2|U|638
6FYY|1|2|U|639
6FYY|1|2|G|640
*
6FYY|1|2|U|693
6FYY|1|2|U|694
6FYY|1|2|U|695
6FYY|1|2|C|696
6FYY|1|2|C|697
6FYY|1|2|U|698
6FYY|1|2|U|699
6FYY|1|2|C|700
*
6FYY|1|2|G|738
6FYY|1|2|G|739
6FYY|1|2|A|740
6FYY|1|2|C|741
6FYY|1|2|U|742
6FYY|1|2|U|743
6FYY|1|2|U|744
*
6FYY|1|2|A|806
6FYY|1|2|U|807
6FYY|1|2|G|808
6FYY|1|2|G|809
6FYY|1|2|A|810
6FYY|1|2|A|811
6FYY|1|2|U|812
6FYY|1|2|A|813
6FYY|1|2|G|814
6FYY|1|2|G|815
6FYY|1|2|A|816
*
6FYY|1|2|U|853
6FYY|1|2|A|854
6FYY|1|2|A|855
6FYY|1|2|U|856
6FYY|1|2|G|857
6FYY|1|2|A|858
6FYY|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

40S ribosomal protein S22

Chain X

KLLA0B11231p