J5_6G18_002

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6G18|1|2|A|590, 6G18|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6G18|1|2|C|30
6G18|1|2|U|31
6G18|1|2|U|32
6G18|1|2|G|33
6G18|1|2|U|34
*
6G18|1|2|A|521
6G18|1|2|A|522
6G18|1|2|A|523
6G18|1|2|U|524
6G18|1|2|A|525
6G18|1|2|A|526
6G18|1|2|C|527
*
6G18|1|2|G|558
6G18|1|2|G|559
6G18|1|2|A|560
6G18|1|2|A|561
6G18|1|2|U|562
6G18|1|2|G|563
6G18|1|2|A|564
6G18|1|2|G|565
*
6G18|1|2|C|585
6G18|1|2|G|586
6G18|1|2|A|587
6G18|1|2|G|588
6G18|1|2|G|589
6G18|1|2|A|590
6G18|1|2|U|591
6G18|1|2|C|592
6G18|1|2|C|593
6G18|1|2|A|594
6G18|1|2|U|595
*
6G18|1|2|A|641
6G18|1|2|U|642
6G18|1|2|A|643
6G18|1|2|G|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog