J5_6G5I_001

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUAG

Length

28 nucleotides

Bulged bases

6G5I|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6G5I|1|2|C|30
6G5I|1|2|U|31
6G5I|1|2|U|32
6G5I|1|2|G|33
6G5I|1|2|U|34
*
6G5I|1|2|A|521
6G5I|1|2|A|522
6G5I|1|2|A|523
6G5I|1|2|U|524
6G5I|1|2|A|525
6G5I|1|2|A|526
6G5I|1|2|C|527
*
6G5I|1|2|G|558
6G5I|1|2|G|559
6G5I|1|2|A|560
6G5I|1|2|A|561
6G5I|1|2|U|562
6G5I|1|2|G|563
*
6G5I|1|2|C|592
6G5I|1|2|C|593
6G5I|1|2|A|594
6G5I|1|2|U|595
6G5I|1|2|U|596
*
6G5I|1|2|A|640
6G5I|1|2|A|641
6G5I|1|2|U|642
6G5I|1|2|A|643
6G5I|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30