J5_6GAW_002
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 6GAW|1|BA|A|1057, 6GAW|1|BA|A|1271, 6GAW|1|BA|U|1272, 6GAW|1|BA|G|1328, 6GAW|1|BA|U|1329, 6GAW|1|BA|U|1432, 6GAW|1|BA|U|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GAW|1|BA|A|1052
6GAW|1|BA|G|1053
6GAW|1|BA|A|1054
6GAW|1|BA|A|1055
6GAW|1|BA|G|1056
6GAW|1|BA|A|1057
6GAW|1|BA|C|1058
6GAW|1|BA|C|1059
*
6GAW|1|BA|G|1269
6GAW|1|BA|G|1270
6GAW|1|BA|A|1271
6GAW|1|BA|U|1272
6GAW|1|BA|A|1273
6GAW|1|BA|A|1274
6GAW|1|BA|C|1275
6GAW|1|BA|A|1276
*
6GAW|1|BA|U|1323
6GAW|1|BA|C|1324
6GAW|1|BA|G|1325
6GAW|1|BA|A|1326
6GAW|1|BA|U|1327
6GAW|1|BA|G|1328
6GAW|1|BA|U|1329
6GAW|1|BA|U|1330
*
6GAW|1|BA|A|1405
6GAW|1|BA|G|1406
6GAW|1|BA|U|1407
6GAW|1|BA|U|1408
6GAW|1|BA|C|1409
6GAW|1|BA|A|1410
6GAW|1|BA|G|1411
*
6GAW|1|BA|C|1429
6GAW|1|BA|G|1430
6GAW|1|BA|G|1431
6GAW|1|BA|U|1432
6GAW|1|BA|U|1433
6GAW|1|BA|U|1434
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B5
- bL32m
- Chain BE
- ICT1
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- 39S ribosomal protein L15, mitochondrial
- Chain BQ
- 39S ribosomal protein L16, mitochondrial
- Chain BW
- uL22m
- Chain Bi
- mL45
Coloring options: