J5_6GBZ_001

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6GBZ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GBZ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0747

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GBZ|1|A|C|47
6GBZ|1|A|G|48
6GBZ|1|A|A|49
6GBZ|1|A|U|50
6GBZ|1|A|G|51
6GBZ|1|A|A|52
6GBZ|1|A|A|53
6GBZ|1|A|G|54
*
6GBZ|1|A|C|116
6GBZ|1|A|G|117
6GBZ|1|A|A|118
6GBZ|1|A|A|119
6GBZ|1|A|U|120
6GBZ|1|A|G|121
*
6GBZ|1|A|C|130
6GBZ|1|A|A|131
*
6GBZ|1|A|U|148
6GBZ|1|A|A|149
6GBZ|1|A|U|150
*
6GBZ|1|A|A|176
6GBZ|1|A|G|177
6GBZ|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34