J5_6GC8_001

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6GC8|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GC8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.084

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GC8|1|A|C|47
6GC8|1|A|G|48
6GC8|1|A|A|49
6GC8|1|A|U|50
6GC8|1|A|G|51
6GC8|1|A|A|52
6GC8|1|A|A|53
6GC8|1|A|G|54
*
6GC8|1|A|C|116
6GC8|1|A|G|117
6GC8|1|A|A|118
6GC8|1|A|A|119
6GC8|1|A|U|120
6GC8|1|A|G|121
*
6GC8|1|A|C|130
6GC8|1|A|A|131
*
6GC8|1|A|U|148
6GC8|1|A|A|149
6GC8|1|A|U|150
*
6GC8|1|A|A|176
6GC8|1|A|G|177
6GC8|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34