J5_6GC8_005

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGUCC

Length

38 nucleotides

Bulged bases

6GC8|1|A|A|2062, 6GC8|1|A|A|2448, 6GC8|1|A|U|2585, 6GC8|1|A|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC8|1|A|G|2057
6GC8|1|A|A|2058
6GC8|1|A|A|2059
6GC8|1|A|A|2060
6GC8|1|A|G|2061
6GC8|1|A|A|2062
6GC8|1|A|C|2063
6GC8|1|A|C|2064
*
6GC8|1|A|G|2446
6GC8|1|A|G|2447
6GC8|1|A|A|2448
6GC8|1|A|U|2449
6GC8|1|A|A|2450
6GC8|1|A|A|2451
6GC8|1|A|C|2452
6GC8|1|A|A|2453
6GC8|1|A|G|2454
*
6GC8|1|A|C|2498
6GC8|1|A|C|2499
6GC8|1|A|U|2500
6GC8|1|A|C|2501
6GC8|1|A|G|2502
6GC8|1|A|A|2503
6GC8|1|A|U|2504
6GC8|1|A|G|2505
6GC8|1|A|U|2506
*
6GC8|1|A|G|2583
6GC8|1|A|U|2584
6GC8|1|A|U|2585
6GC8|1|A|U|2586
6GC8|1|A|A|2587
6GC8|1|A|G|2588
*
6GC8|1|A|C|2606
6GC8|1|A|G|2607
6GC8|1|A|G|2608
6GC8|1|A|U|2609
6GC8|1|A|C|2610
6GC8|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22