J5_6GQ1_004

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAAGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGUC

Length

37 nucleotides

Bulged bases

6GQ1|1|1|G|2116, 6GQ1|1|1|G|2121, 6GQ1|1|1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|1|G|1898
6GQ1|1|1|G|1899
6GQ1|1|1|A|1900
6GQ1|1|1|A|1901
6GQ1|1|1|G|1902
6GQ1|1|1|U|1903
6GQ1|1|1|C|1904
6GQ1|1|1|G|1905
6GQ1|1|1|G|1906
6GQ1|1|1|C|1907
6GQ1|1|1|A|1908
6GQ1|1|1|A|1909
6GQ1|1|1|A|1910
6GQ1|1|1|A|1911
6GQ1|1|1|U|1912
6GQ1|1|1|A|1913
6GQ1|1|1|G|1914
*
6GQ1|1|1|U|1938
6GQ1|1|1|G|1939
*
6GQ1|1|1|U|2109
6GQ1|1|1|G|2110
*
6GQ1|1|1|C|2114
6GQ1|1|1|G|2115
6GQ1|1|1|G|2116
6GQ1|1|1|A|2117
6GQ1|1|1|C|2118
6GQ1|1|1|A|2119
6GQ1|1|1|A|2120
6GQ1|1|1|G|2121
6GQ1|1|1|G|2122
*
6GQ1|1|1|C|2331
6GQ1|1|1|A|2332
6GQ1|1|1|C|2333
6GQ1|1|1|U|2334
6GQ1|1|1|G|2335
6GQ1|1|1|U|2336
6GQ1|1|1|C|2337

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

60S ribosomal protein L3

Chain R

60S ribosomal protein L19-A

Chain V

60S ribosomal protein L23-A

Chain W

60S ribosomal protein L24-A