Loop J5_6GQ1

3D structure

PDB id: 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.4 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 6GQ1|1|1|A|2404, 6GQ1|1|1|A|2817, 6GQ1|1|1|U|2818, 6GQ1|1|1|U|2875, 6GQ1|1|1|U|2954, 6GQ1|1|1|U|2978
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GQ1|1|1|A|2399
6GQ1|1|1|G|2400
6GQ1|1|1|A|2401
6GQ1|1|1|A|2402
6GQ1|1|1|G|2403
6GQ1|1|1|A|2404
6GQ1|1|1|C|2405
6GQ1|1|1|C|2406
*
6GQ1|1|1|G|2815
6GQ1|1|1|G|2816
6GQ1|1|1|A|2817
6GQ1|1|1|U|2818
6GQ1|1|1|A|2819
6GQ1|1|1|A|2820
6GQ1|1|1|C|2821
6GQ1|1|1|U|2822
6GQ1|1|1|G|2823
*
6GQ1|1|1|C|2867
6GQ1|1|1|U|2868
6GQ1|1|1|U|2869
6GQ1|1|1|C|2870
6GQ1|1|1|G|2871
6GQ1|1|1|A|2872
6GQ1|1|1|U|2873
6GQ1|1|1|G|2874
6GQ1|1|1|U|2875
6GQ1|1|1|C|2876
*
6GQ1|1|1|G|2951
6GQ1|1|1|G|2952
6GQ1|1|1|U|2953
6GQ1|1|1|U|2954
6GQ1|1|1|U|2955
6GQ1|1|1|A|2956
6GQ1|1|1|G|2957
*
6GQ1|1|1|U|2975
6GQ1|1|1|A|2976
6GQ1|1|1|G|2977
6GQ1|1|1|U|2978
6GQ1|1|1|U|2979
6GQ1|1|1|U|2980

Current chains

Chain 1: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A: 60S ribosomal protein L2-A
Chain B: 60S ribosomal protein L3
Chain C: 60S ribosomal protein L4-A
Chain b: 60S ribosomal protein L29

J5_6GQ1_006