J5_6GQ1_013

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6GQ1|1|2|U|132, 6GQ1|1|2|U|133, 6GQ1|1|2|U|134, 6GQ1|1|2|A|135, 6GQ1|1|2|C|136, 6GQ1|1|2|U|137, 6GQ1|1|2|A|140, 6GQ1|1|2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|A|124
6GQ1|1|2|U|125
6GQ1|1|2|A|126
6GQ1|1|2|G|127
6GQ1|1|2|U|128
6GQ1|1|2|U|129
6GQ1|1|2|C|130
6GQ1|1|2|C|131
6GQ1|1|2|U|132
6GQ1|1|2|U|133
6GQ1|1|2|U|134
6GQ1|1|2|A|135
6GQ1|1|2|C|136
6GQ1|1|2|U|137
6GQ1|1|2|A|138
6GQ1|1|2|C|139
6GQ1|1|2|A|140
6GQ1|1|2|U|141
6GQ1|1|2|G|142
6GQ1|1|2|G|143
*
6GQ1|1|2|C|172
6GQ1|1|2|A|173
6GQ1|1|2|U|174
6GQ1|1|2|G|175
6GQ1|1|2|C|176
6GQ1|1|2|U|177
6GQ1|1|2|U|178
6GQ1|1|2|A|179
6GQ1|1|2|A|180
6GQ1|1|2|A|181
6GQ1|1|2|A|182
*
6GQ1|1|2|U|203
6GQ1|1|2|G|204
*
6GQ1|1|2|C|263
6GQ1|1|2|G|264
6GQ1|1|2|A|265
6GQ1|1|2|A|266
6GQ1|1|2|U|267
*
6GQ1|1|2|A|288
6GQ1|1|2|U|289
6GQ1|1|2|G|290
6GQ1|1|2|G|291
6GQ1|1|2|U|292
6GQ1|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A

Chain y

40S ribosomal protein S8-A