J5_6GQ1_014

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6GQ1|1|2|U|638, 6GQ1|1|2|U|639, 6GQ1|1|2|U|694, 6GQ1|1|2|C|696, 6GQ1|1|2|C|697, 6GQ1|1|2|U|813, 6GQ1|1|2|G|815, 6GQ1|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQ1|1|2|A|636
6GQ1|1|2|C|637
6GQ1|1|2|U|638
6GQ1|1|2|U|639
6GQ1|1|2|U|640
6GQ1|1|2|G|641
*
6GQ1|1|2|U|693
6GQ1|1|2|U|694
6GQ1|1|2|U|695
6GQ1|1|2|C|696
6GQ1|1|2|C|697
6GQ1|1|2|U|698
*
6GQ1|1|2|A|740
6GQ1|1|2|C|741
6GQ1|1|2|U|742
6GQ1|1|2|U|743
6GQ1|1|2|U|744
*
6GQ1|1|2|A|807
6GQ1|1|2|U|808
6GQ1|1|2|A|809
6GQ1|1|2|G|810
6GQ1|1|2|A|811
6GQ1|1|2|A|812
6GQ1|1|2|U|813
6GQ1|1|2|A|814
6GQ1|1|2|G|815
6GQ1|1|2|G|816
6GQ1|1|2|A|817
*
6GQ1|1|2|U|854
6GQ1|1|2|A|855
6GQ1|1|2|A|856
6GQ1|1|2|U|857
6GQ1|1|2|G|858
6GQ1|1|2|A|859
6GQ1|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AD

40S ribosomal protein S13

Chain AM

40S ribosomal protein S22-A

Chain R

60S ribosomal protein L19-A

Chain x

40S ribosomal protein S7-A