3D structure

PDB id
6GQV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGU
Length
33 nucleotides
Bulged bases
6GQV|1|1|G|2116, 6GQV|1|1|G|2121, 6GQV|1|1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQV|1|1|A|1901
6GQV|1|1|G|1902
6GQV|1|1|U|1903
6GQV|1|1|C|1904
6GQV|1|1|G|1905
6GQV|1|1|G|1906
6GQV|1|1|C|1907
6GQV|1|1|A|1908
6GQV|1|1|A|1909
6GQV|1|1|A|1910
6GQV|1|1|A|1911
6GQV|1|1|U|1912
6GQV|1|1|A|1913
6GQV|1|1|G|1914
*
6GQV|1|1|U|1938
6GQV|1|1|G|1939
*
6GQV|1|1|U|2109
6GQV|1|1|G|2110
*
6GQV|1|1|C|2114
6GQV|1|1|G|2115
6GQV|1|1|G|2116
6GQV|1|1|A|2117
6GQV|1|1|C|2118
6GQV|1|1|A|2119
6GQV|1|1|A|2120
6GQV|1|1|G|2121
6GQV|1|1|G|2122
*
6GQV|1|1|C|2331
6GQV|1|1|A|2332
6GQV|1|1|C|2333
6GQV|1|1|U|2334
6GQV|1|1|G|2335
6GQV|1|1|U|2336

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
60S ribosomal protein L3
Chain R
60S ribosomal protein L19-A
Chain V
60S ribosomal protein L23-A
Chain W
60S ribosomal protein L24-A
Chain y
40S ribosomal protein S8-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2548 s