J5_6GQV_005
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGU
- Length
- 33 nucleotides
- Bulged bases
- 6GQV|1|1|G|2116, 6GQV|1|1|G|2121, 6GQV|1|1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|1|A|1901
6GQV|1|1|G|1902
6GQV|1|1|U|1903
6GQV|1|1|C|1904
6GQV|1|1|G|1905
6GQV|1|1|G|1906
6GQV|1|1|C|1907
6GQV|1|1|A|1908
6GQV|1|1|A|1909
6GQV|1|1|A|1910
6GQV|1|1|A|1911
6GQV|1|1|U|1912
6GQV|1|1|A|1913
6GQV|1|1|G|1914
*
6GQV|1|1|U|1938
6GQV|1|1|G|1939
*
6GQV|1|1|U|2109
6GQV|1|1|G|2110
*
6GQV|1|1|C|2114
6GQV|1|1|G|2115
6GQV|1|1|G|2116
6GQV|1|1|A|2117
6GQV|1|1|C|2118
6GQV|1|1|A|2119
6GQV|1|1|A|2120
6GQV|1|1|G|2121
6GQV|1|1|G|2122
*
6GQV|1|1|C|2331
6GQV|1|1|A|2332
6GQV|1|1|C|2333
6GQV|1|1|U|2334
6GQV|1|1|G|2335
6GQV|1|1|U|2336
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain W
- 60S ribosomal protein L24-A
- Chain y
- 40S ribosomal protein S8-A
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