J5_6GQV_008

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6GQV|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|C|31
6GQV|1|2|U|32
6GQV|1|2|U|33
6GQV|1|2|G|34
6GQV|1|2|U|35
*
6GQV|1|2|A|473
6GQV|1|2|A|474
6GQV|1|2|A|475
6GQV|1|2|U|476
6GQV|1|2|A|477
6GQV|1|2|A|478
6GQV|1|2|C|479
*
6GQV|1|2|G|509
6GQV|1|2|G|510
6GQV|1|2|A|511
6GQV|1|2|A|512
6GQV|1|2|U|513
6GQV|1|2|G|514
6GQV|1|2|A|515
6GQV|1|2|G|516
*
6GQV|1|2|C|536
6GQV|1|2|G|537
6GQV|1|2|A|538
6GQV|1|2|G|539
6GQV|1|2|G|540
6GQV|1|2|A|541
6GQV|1|2|A|542
6GQV|1|2|C|543
6GQV|1|2|A|544
6GQV|1|2|A|545
6GQV|1|2|U|546
*
6GQV|1|2|A|592
6GQV|1|2|U|593
6GQV|1|2|A|594
6GQV|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A