J5_6GQV_012

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6GQV|1|2|U|639, 6GQV|1|2|U|694, 6GQV|1|2|C|696, 6GQV|1|2|C|697, 6GQV|1|2|U|742, 6GQV|1|2|U|813, 6GQV|1|2|G|815, 6GQV|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|636
6GQV|1|2|C|637
6GQV|1|2|U|638
6GQV|1|2|U|639
6GQV|1|2|U|640
6GQV|1|2|G|641
*
6GQV|1|2|U|693
6GQV|1|2|U|694
6GQV|1|2|U|695
6GQV|1|2|C|696
6GQV|1|2|C|697
6GQV|1|2|U|698
6GQV|1|2|U|699
*
6GQV|1|2|G|739
6GQV|1|2|A|740
6GQV|1|2|C|741
6GQV|1|2|U|742
6GQV|1|2|U|743
6GQV|1|2|U|744
*
6GQV|1|2|A|807
6GQV|1|2|U|808
6GQV|1|2|A|809
6GQV|1|2|G|810
6GQV|1|2|A|811
6GQV|1|2|A|812
6GQV|1|2|U|813
6GQV|1|2|A|814
6GQV|1|2|G|815
6GQV|1|2|G|816
6GQV|1|2|A|817
*
6GQV|1|2|U|854
6GQV|1|2|A|855
6GQV|1|2|A|856
6GQV|1|2|U|857
6GQV|1|2|G|858
6GQV|1|2|A|859
6GQV|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AD

40S ribosomal protein S13

Chain AM

40S ribosomal protein S22-A

Chain R

60S ribosomal protein L19-A

Chain u

40S ribosomal protein S4-A

Chain x

40S ribosomal protein S7-A