J5_6GQV_013

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6GQV|1|2|U|128, 6GQV|1|2|U|132, 6GQV|1|2|U|134, 6GQV|1|2|A|135, 6GQV|1|2|C|136, 6GQV|1|2|U|137, 6GQV|1|2|A|138, 6GQV|1|2|A|140, 6GQV|1|2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|124
6GQV|1|2|U|125
6GQV|1|2|A|126
6GQV|1|2|G|127
6GQV|1|2|U|128
6GQV|1|2|U|129
6GQV|1|2|C|130
6GQV|1|2|C|131
6GQV|1|2|U|132
6GQV|1|2|U|133
6GQV|1|2|U|134
6GQV|1|2|A|135
6GQV|1|2|C|136
6GQV|1|2|U|137
6GQV|1|2|A|138
6GQV|1|2|C|139
6GQV|1|2|A|140
6GQV|1|2|U|141
6GQV|1|2|G|142
6GQV|1|2|G|143
*
6GQV|1|2|C|172
6GQV|1|2|A|173
6GQV|1|2|U|174
6GQV|1|2|G|175
6GQV|1|2|C|176
6GQV|1|2|U|177
6GQV|1|2|U|178
6GQV|1|2|A|179
6GQV|1|2|A|180
6GQV|1|2|A|181
6GQV|1|2|A|182
*
6GQV|1|2|U|203
6GQV|1|2|G|204
*
6GQV|1|2|C|263
6GQV|1|2|G|264
6GQV|1|2|A|265
*
6GQV|1|2|U|289
6GQV|1|2|G|290
6GQV|1|2|G|291
6GQV|1|2|U|292
6GQV|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A

Chain y

40S ribosomal protein S8-A