J5_6GSK_016

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6GSK|1|1H|A|2062, 6GSK|1|1H|A|2448, 6GSK|1|1H|U|2449, 6GSK|1|1H|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|1H|A|2057
6GSK|1|1H|A|2058
6GSK|1|1H|A|2059
6GSK|1|1H|A|2060
6GSK|1|1H|G|2061
6GSK|1|1H|A|2062
6GSK|1|1H|C|2063
6GSK|1|1H|C|2064
*
6GSK|1|1H|G|2446
6GSK|1|1H|G|2447
6GSK|1|1H|A|2448
6GSK|1|1H|U|2449
6GSK|1|1H|A|2450
6GSK|1|1H|A|2451
6GSK|1|1H|C|2452
6GSK|1|1H|A|2453
*
6GSK|1|1H|U|2500
6GSK|1|1H|C|2501
6GSK|1|1H|G|2502
6GSK|1|1H|A|2503
6GSK|1|1H|U|2504
6GSK|1|1H|G|2505
6GSK|1|1H|U|2506
6GSK|1|1H|C|2507
*
6GSK|1|1H|G|2582
6GSK|1|1H|G|2583
6GSK|1|1H|U|2584
6GSK|1|1H|U|2585
6GSK|1|1H|C|2586
6GSK|1|1H|A|2587
6GSK|1|1H|G|2588
*
6GSK|1|1H|C|2606
6GSK|1|1H|G|2607
6GSK|1|1H|G|2608
6GSK|1|1H|U|2609
6GSK|1|1H|C|2610
6GSK|1|1H|U|2611

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 1K

Transfer RNA; tRNA

Chain 21

50S ribosomal protein L3

Chain 2K

Transfer RNA; tRNA

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15

Chain 88

50S ribosomal protein L16

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32