J5_6GSM_002
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CAUGU*GCGAAUGGC*GAG*CAC*GGCAG
- Length
- 25 nucleotides
- Bulged bases
- 6GSM|1|2|A|93, 6GSM|1|2|C|423, 6GSM|1|2|A|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSM|1|2|C|54
6GSM|1|2|A|55
6GSM|1|2|U|56
6GSM|1|2|G|57
6GSM|1|2|U|58
*
6GSM|1|2|G|89
6GSM|1|2|C|90
6GSM|1|2|G|91
6GSM|1|2|A|92
6GSM|1|2|A|93
6GSM|1|2|U|94
6GSM|1|2|G|95
6GSM|1|2|G|96
6GSM|1|2|C|97
*
6GSM|1|2|G|385
6GSM|1|2|A|386
6GSM|1|2|G|387
*
6GSM|1|2|C|408
6GSM|1|2|A|409
6GSM|1|2|C|410
*
6GSM|1|2|G|421
6GSM|1|2|G|422
6GSM|1|2|C|423
6GSM|1|2|A|424
6GSM|1|2|G|425
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: