Loop J5_6GSM

3D structure

PDB id: 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a partial yeast 48S preinitiation complex in open conformation
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.15 Å

Loop

Sequence: ACUUUGGG*UCUUUCCU*ACUUU*AUGGAAUAGGACGUUU*AUCGUAAUGAU
Length: 48 nucleotides
Bulged bases: 6GSM|1|2|C|696, 6GSM|1|2|C|697, 6GSM|1|2|U|742, 6GSM|1|2|U|812, 6GSM|1|2|G|814, 6GSM|1|2|U|819, 6GSM|1|2|A|855
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GSM|1|2|A|635
6GSM|1|2|C|636
6GSM|1|2|U|637
6GSM|1|2|U|638
6GSM|1|2|U|639
6GSM|1|2|G|640
6GSM|1|2|G|641
6GSM|1|2|G|642
*
6GSM|1|2|U|691
6GSM|1|2|C|692
6GSM|1|2|U|693
6GSM|1|2|U|694
6GSM|1|2|U|695
6GSM|1|2|C|696
6GSM|1|2|C|697
6GSM|1|2|U|698
*
6GSM|1|2|A|740
6GSM|1|2|C|741
6GSM|1|2|U|742
6GSM|1|2|U|743
6GSM|1|2|U|744
*
6GSM|1|2|A|806
6GSM|1|2|U|807
6GSM|1|2|G|808
6GSM|1|2|G|809
6GSM|1|2|A|810
6GSM|1|2|A|811
6GSM|1|2|U|812
6GSM|1|2|A|813
6GSM|1|2|G|814
6GSM|1|2|G|815
6GSM|1|2|A|816
6GSM|1|2|C|817
6GSM|1|2|G|818
6GSM|1|2|U|819
6GSM|1|2|U|820
6GSM|1|2|U|821
*
6GSM|1|2|A|849
6GSM|1|2|U|850
6GSM|1|2|C|851
6GSM|1|2|G|852
6GSM|1|2|U|853
6GSM|1|2|A|854
6GSM|1|2|A|855
6GSM|1|2|U|856
6GSM|1|2|G|857
6GSM|1|2|A|858
6GSM|1|2|U|859

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain H: 40S ribosomal protein S7
Chain L: KLLA0A10483p
Chain N: KLLA0F18040p
Chain W: 40S ribosomal protein S22

J5_6GSM_005