Loop J5_6GSM

3D structure

PDB id: 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a partial yeast 48S preinitiation complex in open conformation
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.15 Å

Loop

Sequence: CUUGUCU*AUAAAUAACGAUA*UAAUUGGAAUGAGU*ACGAGGAACAAC*GUAG
Length: 50 nucleotides
Bulged bases: 6GSM|1|2|A|505, 6GSM|1|2|G|538, 6GSM|1|2|G|539, 6GSM|1|2|A|540, 6GSM|1|2|A|541, 6GSM|1|2|A|543
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GSM|1|2|C|31
6GSM|1|2|U|32
6GSM|1|2|U|33
6GSM|1|2|G|34
6GSM|1|2|U|35
6GSM|1|2|C|36
6GSM|1|2|U|37
*
6GSM|1|2|A|470
6GSM|1|2|U|471
6GSM|1|2|A|472
6GSM|1|2|A|473
6GSM|1|2|A|474
6GSM|1|2|U|475
6GSM|1|2|A|476
6GSM|1|2|A|477
6GSM|1|2|C|478
6GSM|1|2|G|479
6GSM|1|2|A|480
6GSM|1|2|U|481
6GSM|1|2|A|482
*
6GSM|1|2|U|503
6GSM|1|2|A|504
6GSM|1|2|A|505
6GSM|1|2|U|506
6GSM|1|2|U|507
6GSM|1|2|G|508
6GSM|1|2|G|509
6GSM|1|2|A|510
6GSM|1|2|A|511
6GSM|1|2|U|512
6GSM|1|2|G|513
6GSM|1|2|A|514
6GSM|1|2|G|515
6GSM|1|2|U|516
*
6GSM|1|2|A|534
6GSM|1|2|C|535
6GSM|1|2|G|536
6GSM|1|2|A|537
6GSM|1|2|G|538
6GSM|1|2|G|539
6GSM|1|2|A|540
6GSM|1|2|A|541
6GSM|1|2|C|542
6GSM|1|2|A|543
6GSM|1|2|A|544
6GSM|1|2|C|545
*
6GSM|1|2|G|591
6GSM|1|2|U|592
6GSM|1|2|A|593
6GSM|1|2|G|594

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain J: KLLA0E23673p
Chain X: RPS23
Chain Y: 40S ribosomal protein S24
Chain e: 40S ribosomal protein S30

J5_6GSM_006