J5_6GSN_001

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CUUGU*AAAUAACG*UGGAAUGAGUACA*UUAACGAGGAACAAC*GUAG

Length

45 nucleotides

Bulged bases

6GSN|1|2|A|540, 6GSN|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|C|31
6GSN|1|2|U|32
6GSN|1|2|U|33
6GSN|1|2|G|34
6GSN|1|2|U|35
*
6GSN|1|2|A|472
6GSN|1|2|A|473
6GSN|1|2|A|474
6GSN|1|2|U|475
6GSN|1|2|A|476
6GSN|1|2|A|477
6GSN|1|2|C|478
6GSN|1|2|G|479
*
6GSN|1|2|U|507
6GSN|1|2|G|508
6GSN|1|2|G|509
6GSN|1|2|A|510
6GSN|1|2|A|511
6GSN|1|2|U|512
6GSN|1|2|G|513
6GSN|1|2|A|514
6GSN|1|2|G|515
6GSN|1|2|U|516
6GSN|1|2|A|517
6GSN|1|2|C|518
6GSN|1|2|A|519
*
6GSN|1|2|U|531
6GSN|1|2|U|532
6GSN|1|2|A|533
6GSN|1|2|A|534
6GSN|1|2|C|535
6GSN|1|2|G|536
6GSN|1|2|A|537
6GSN|1|2|G|538
6GSN|1|2|G|539
6GSN|1|2|A|540
6GSN|1|2|A|541
6GSN|1|2|C|542
6GSN|1|2|A|543
6GSN|1|2|A|544
6GSN|1|2|C|545
*
6GSN|1|2|G|591
6GSN|1|2|U|592
6GSN|1|2|A|593
6GSN|1|2|G|594

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain J

KLLA0E23673p

Chain X

RPS23

Chain Y

40S ribosomal protein S24

Chain e

40S ribosomal protein S30