J5_6GSN_002
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 6GSN|1|2|A|93, 6GSN|1|2|A|411, 6GSN|1|2|C|423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSN|1|2|C|54
6GSN|1|2|A|55
6GSN|1|2|U|56
6GSN|1|2|G|57
*
6GSN|1|2|C|90
6GSN|1|2|G|91
6GSN|1|2|A|92
6GSN|1|2|A|93
6GSN|1|2|U|94
6GSN|1|2|G|95
6GSN|1|2|G|96
6GSN|1|2|C|97
*
6GSN|1|2|G|385
6GSN|1|2|A|386
6GSN|1|2|G|387
*
6GSN|1|2|C|408
6GSN|1|2|A|409
6GSN|1|2|C|410
6GSN|1|2|A|411
6GSN|1|2|U|412
*
6GSN|1|2|A|419
6GSN|1|2|A|420
6GSN|1|2|G|421
6GSN|1|2|G|422
6GSN|1|2|C|423
6GSN|1|2|A|424
6GSN|1|2|G|425
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: