J5_6GSN_005

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUGGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6GSN|1|2|U|637, 6GSN|1|2|U|638, 6GSN|1|2|U|812, 6GSN|1|2|G|814, 6GSN|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|A|635
6GSN|1|2|C|636
6GSN|1|2|U|637
6GSN|1|2|U|638
6GSN|1|2|U|639
6GSN|1|2|G|640
*
6GSN|1|2|U|693
6GSN|1|2|U|694
6GSN|1|2|U|695
6GSN|1|2|C|696
6GSN|1|2|C|697
6GSN|1|2|U|698
6GSN|1|2|U|699
*
6GSN|1|2|G|739
6GSN|1|2|A|740
6GSN|1|2|C|741
6GSN|1|2|U|742
6GSN|1|2|U|743
6GSN|1|2|U|744
*
6GSN|1|2|A|806
6GSN|1|2|U|807
6GSN|1|2|G|808
6GSN|1|2|G|809
6GSN|1|2|A|810
6GSN|1|2|A|811
6GSN|1|2|U|812
6GSN|1|2|A|813
6GSN|1|2|G|814
6GSN|1|2|G|815
6GSN|1|2|A|816
*
6GSN|1|2|U|853
6GSN|1|2|A|854
6GSN|1|2|A|855
6GSN|1|2|U|856
6GSN|1|2|G|857
6GSN|1|2|A|858
6GSN|1|2|U|859

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

40S ribosomal protein S22