J5_6GSN_006

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AUAGUUCCUUUACUACAU*AUGCUUAAAA*UG*CGAAU*AUGGUU

Length

41 nucleotides

Bulged bases

6GSN|1|2|C|130, 6GSN|1|2|C|131, 6GSN|1|2|U|132, 6GSN|1|2|U|133, 6GSN|1|2|U|134, 6GSN|1|2|A|135, 6GSN|1|2|C|136, 6GSN|1|2|C|139, 6GSN|1|2|A|140, 6GSN|1|2|U|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|A|124
6GSN|1|2|U|125
6GSN|1|2|A|126
6GSN|1|2|G|127
6GSN|1|2|U|128
6GSN|1|2|U|129
6GSN|1|2|C|130
6GSN|1|2|C|131
6GSN|1|2|U|132
6GSN|1|2|U|133
6GSN|1|2|U|134
6GSN|1|2|A|135
6GSN|1|2|C|136
6GSN|1|2|U|137
6GSN|1|2|A|138
6GSN|1|2|C|139
6GSN|1|2|A|140
6GSN|1|2|U|141
*
6GSN|1|2|A|172
6GSN|1|2|U|173
6GSN|1|2|G|174
6GSN|1|2|C|175
6GSN|1|2|U|176
6GSN|1|2|U|177
6GSN|1|2|A|178
6GSN|1|2|A|179
6GSN|1|2|A|180
6GSN|1|2|A|181
*
6GSN|1|2|U|202
6GSN|1|2|G|203
*
6GSN|1|2|C|262
6GSN|1|2|G|263
6GSN|1|2|A|264
6GSN|1|2|A|265
6GSN|1|2|U|266
*
6GSN|1|2|A|287
6GSN|1|2|U|288
6GSN|1|2|G|289
6GSN|1|2|G|290
6GSN|1|2|U|291
6GSN|1|2|U|292

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8