J5_6GWT_001

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6GWT|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GWT_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.125

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GWT|1|A|C|47
6GWT|1|A|G|48
6GWT|1|A|A|49
6GWT|1|A|U|50
6GWT|1|A|G|51
6GWT|1|A|A|52
6GWT|1|A|A|53
6GWT|1|A|G|54
*
6GWT|1|A|C|116
6GWT|1|A|G|117
6GWT|1|A|A|118
6GWT|1|A|A|119
6GWT|1|A|U|120
6GWT|1|A|G|121
*
6GWT|1|A|C|130
6GWT|1|A|A|131
*
6GWT|1|A|U|148
6GWT|1|A|A|149
6GWT|1|A|U|150
*
6GWT|1|A|A|176
6GWT|1|A|G|177
6GWT|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34